[mira_talk] Re: Removing a duplicate entry from a CAF file

  • From: Robert Bruccoleri <bruc@xxxxxxxxxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Fri, 14 Oct 2011 21:19:20 -0400

Dear Colleagues,
If you work with genomes that have evolved via gene duplication and mutation, you definitely want to look in rep contigs. There is gold there!

   Cheers,
   Bob

Bastien Chevreux wrote:
On Oct 13, 2011, at 23:05 , John Nash wrote:
On another note, is it possible or even desirable to remove all the "rep" 
contigs from an assembly?  Assume that I have already checked them in gap5 to make sure 
that they are crap.

I think you'll like "convert_project -N"

B.



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