[mira_talk] Re: Problems using sff extract

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Tue, 14 Dec 2010 09:08:23 +0100

On Dienstag 14 Dezember 2010 Ganga Jeena wrote:
> [dc103@hpc orig_data]$ echo $PATH
> /usr/lib64/qt-3.3/bin:/usr/mpi/gnu/ClusterTools-8.2/bin/:/usr/kerberos/bin:
> /usr/bin:usr/sbin:/gridware/sge/bin/lx24-amd64:/opt/intel/Compiler/11.1/072
> /bin/intel64:/opt/velvet_0.7.63:/opt/AByss/bin:/opt/mpiblast-1.5/bin:/opt/e
> dena2.1.1_linux64:/opt/wgs-6.1/Linux-amd64/bin:/opt/SOAPdenovo_Release1.04:
> /opt/oases_0.1.16:/opt/rar:/usr/local/bin:/bin:/usr/bin:/opt/454/bin:/home/
> dc103/bin

Now, when the SSAHA2 binaries are in /usr/local/bin, what does

  /usr/local/bin/ssaha2

say?

B.

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