[mira_talk] Re: Paired end info - SAM/BAM output from MIRA?

On Wed, Nov 3, 2010 at 7:12 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
>
> On Freitag 29 Oktober 2010 Peter wrote:
>> On Thu, Sep 30, 2010 at 7:43 PM, Peter <peter@xxxxxxxxxxxxxxxxxxxxx> wrote:
>> > But first, lets see if MAF to SAM (and thus BAM) is useful.
>>
>> I've put the script under version control, available here:
>> http://github.com/peterjc/maf2sam
>
> Nice. Would you mind if I take a version into the 3rd party scripts directory
> of the MIRA distribution packages?

Sure - but as it stands it has a dependency on Biopython, which as I've
said before I could work around - probably it would need a few hours
free time (allowing for testing).

In the meantime, I've tagged the current code as v0.0.7 and included links
to the github repository in the header comments.

Peter

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