[mira_talk] Re: Paired end info - SAM/BAM output from MIRA?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 1 Jul 2010 20:32:24 +0200
On Donnerstag 01 Juli 2010 Peter wrote:
> I'm starting to get more paired end data, and would like to be able look
> at this information in alignment viewers. What MIRA output file format
> would you recommend for this?
At present I use CAF and caf2gap to convert to a gap4 database.
> [...]
> Bastien - Is SAM (or even BAM) output something you are thinking
> about supporting directly in MIRA?
Yet another output format? :-)
It's not been requested so far. At first sight I miss the possibility to add
important things like tags, which greatly reduces the usefulness of that
format.
I don't say I'll never implement that format, but it won't happen soon.
Bastien
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
