[mira_talk] Re: Paired end info - SAM/BAM output from MIRA?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 2 Oct 2010 10:11:08 +0200
On Freitag 01 Oktober 2010 Bastien Chevreux wrote:
> On Freitag 01 Oktober 2010 Raj Kumar, Praveen Kumar Mr. wrote:
> > I am trying to output my mapping assembly in MAF format with this
> > option (-OUT:orc=yes:ora=no:ota=no:otc=no:otm=yes).......but ended up in
> > the following
>
> Interesting bug, need to fix that.
> Anyway, you don't need to "force" MIRA to output MAF ... it does it per
> default.
Correcting myself a bit: you would need to use -OUT:orm and not -OUT:otm ...
but that does not parse either. Will work in the next release.
But as I said: MIRA outputs MAF per default in the results at the moment.
B.
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