[mira_talk] Re: Paired end info - SAM/BAM output from MIRA?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 1 Oct 2010 08:40:23 +0200
On Freitag 01 Oktober 2010 Raj Kumar, Praveen Kumar Mr. wrote:
> Hi,
> I am trying to output my mapping assembly in MAF format with this
> option (-OUT:orc=yes:ora=no:ota=no:otc=no:otm=yes).......but ended up in
> the following
>
> ========================= Parameter parsing error(s)
> ==========================
>
> * Parameter section: '-OUT'
> * unrecognised string or unexpected character: otm
>
> * Parameter section: '-OUT'
> * unrecognised string or unexpected character: yes
> * (may be due to previous errors)
>
> ===========================================================================
> ====
Interesting bug, need to fix that.
Anyway, you don't need to "force" MIRA to output MAF ... it does it per
default.
B.
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