The results folder is empty and there is no log file that was created. Here are a list of documents present after it got killed: [AdrianP@adrianpelin gigaspora]$ ls -al total 16 drwxrwxr-x. 4 AdrianP AdrianP 4096 May 9 22:59 . drwxr-xr-x. 9 AdrianP AdrianP 4096 May 8 14:19 .. drwxrwxr-x. 6 AdrianP AdrianP 4096 May 9 22:59 gigaspora2_denovo_assembly drwxrwxr-x. 6 AdrianP AdrianP 4096 May 8 14:49 gigaspora_denovo_assembly lrwxrwxrwx. 1 AdrianP AdrianP 55 May 8 14:28 gigaspora_in.454.fastq -> /home/AdrianP/assembly/data/G1P7DQF02.GIGASPO_DNA.fastq lrwxrwxrwx. 1 AdrianP AdrianP 42 May 8 14:20 gigaspora_in.solexa.fastq -> /home/AdrianP/assembly/data/all_GDR-10.txt lrwxrwxrwx. 1 AdrianP AdrianP 53 May 8 14:29 gigaspora_traceinfo_in.454.xml -> /home/AdrianP/assembly/data/G1P7DQF02.GIGASPO_DNA.xml -rw-rw-r--. 1 AdrianP AdrianP 0 May 9 19:21 log_hybdn.txt [AdrianP@adrianpelin gigaspora_denovo_assembly]$ ls -al gigaspora_denovo_d_log total 43325088 drwxrwxr-x. 2 AdrianP AdrianP 4096 May 9 17:04 . drwxrwxr-x. 6 AdrianP AdrianP 4096 May 8 14:49 .. -rw-rw-r--. 1 AdrianP AdrianP 0 May 8 14:51 gigaspora_denovo_error_reads_invalid -rw-rw-r--. 1 AdrianP AdrianP 54510239 May 9 17:04 gigaspora_denovo_info_consensustaglist.1.txt -rw-rw-r--. 1 AdrianP AdrianP 150430571 May 9 17:04 gigaspora_denovo_info_contigreadlist_pass.1.txt -rw-rw-r--. 1 AdrianP AdrianP 5463568 May 9 17:04 gigaspora_denovo_info_contigstats_pass.1.txt -rw-rw-r--. 1 AdrianP AdrianP 105015720 May 9 17:04 gigaspora_denovo_info_debrislist_pass.1.txt -rw-rw-r--. 1 AdrianP AdrianP 12764694 May 8 15:10 gigaspora_denovo_info_reads_tooshort -rw-rw-r--. 1 AdrianP AdrianP 1459307936 May 9 17:04 gigaspora_denovo_info_readtaglist.1.txt -rw-rw-r--. 1 AdrianP AdrianP 328044202 May 8 15:49 gigaspora_denovo_int_clippings.0.txt -rw-rw-r--. 1 AdrianP AdrianP 13055712128 May 8 15:54 gigaspora_denovo_int_normalisedskims_preassembly.0.bin -rw-rw-r--. 1 AdrianP AdrianP 2234065416 May 8 15:49 gigaspora_denovo_int_posmatchc_preassembly.0.lst -rw-rw-r--. 1 AdrianP AdrianP 715096296 May 8 16:00 gigaspora_denovo_int_posmatchc_preassembly.0.lst.reduced -rw-rw-r--. 1 AdrianP AdrianP 2661826632 May 8 15:49 gigaspora_denovo_int_posmatchf_preassembly.0.lst -rw-rw-r--. 1 AdrianP AdrianP 864158976 May 8 16:00 gigaspora_denovo_int_posmatchf_preassembly.0.lst.reduced -rw-rw-r--. 1 AdrianP AdrianP 0 May 8 15:17 gigaspora_denovo_int_posmatch_megahubs_preassembly.0.lst -rw-rw-r--. 1 AdrianP AdrianP 0 May 8 15:49 gigaspora_denovo_int_posmatch_multicopystat_preassembly.0.txt -rw-rw-r--. 1 AdrianP AdrianP 2523216918 May 9 17:04 gigaspora_denovo_out_pass.1.caf -rw-rw-r--. 1 AdrianP AdrianP 232766668 May 8 14:51 gigaspora_denovo_readpoolinfo.lst -rw-rw-r--. 1 AdrianP AdrianP 1014834464 May 8 15:13 hashstat.bin -rw-rw-r--. 1 AdrianP AdrianP 3000650484 May 8 16:40 miralog.ads_pass.1.adsfacts -rw-rw-r--. 1 AdrianP AdrianP 214925035 May 8 16:45 miralog.ads_pass.1.adsfacts.pclusters -rw-rw-r--. 1 AdrianP AdrianP 1778880160 May 8 16:40 miralog.ads_pass.1.complement -rw-rw-r--. 1 AdrianP AdrianP 2252002749 May 8 16:40 miralog.ads_pass.1.forward -rw-rw-r--. 1 AdrianP AdrianP 1017515760 May 8 16:40 miralog.ads_pass.1.reject -rw-rw-r--. 1 AdrianP AdrianP 0 May 8 15:10 miralog.noqualities -rw-rw-r--. 1 AdrianP AdrianP 187902039 May 8 15:10 miralog.usedids -rw-rw-r--. 1 AdrianP AdrianP 1641613900 May 9 19:21 repeat_resolve.1.adsfacts -rw-rw-r--. 1 AdrianP AdrianP 2241239073 May 9 19:21 repeat_resolve.1.complement -rw-rw-r--. 1 AdrianP AdrianP 2973604403 May 9 18:19 repeat_resolve.1.forward -rw-rw-r--. 1 AdrianP AdrianP 3639107589 May 9 19:21 repeat_resolve.1.reject AdrianP@adrianpelin gigaspora_denovo_assembly]$ ls -al gigaspora_denovo_d_info total 149324 drwxrwxr-x. 2 AdrianP AdrianP 4096 May 9 17:04 . drwxrwxr-x. 6 AdrianP AdrianP 4096 May 8 14:49 .. -rw-rw-r--. 1 AdrianP AdrianP 2368 May 9 17:04 gigaspora_denovo_info_assembly.txt -rw-rw-r--. 1 AdrianP AdrianP 139 May 8 14:49 gigaspora_denovo_info_callparameters.txt -rw-rw-r--. 1 AdrianP AdrianP 152890262 May 8 15:17 gigaspora_denovo_info_readrepeats.lst [AdrianP@adrianpelin gigaspora_denovo_assembly]$ ls -al gigaspora_denovo_d_chkpt total 2117620 drwxrwxr-x. 2 AdrianP AdrianP 4096 May 8 16:01 . drwxrwxr-x. 6 AdrianP AdrianP 4096 May 8 14:49 .. -rw-rw-r--. 1 AdrianP AdrianP 2 May 8 16:01 passInfo.txt -rw-rw-r--. 1 AdrianP AdrianP 2168424930 May 8 16:01 readpool.maf [AdrianP@adrianpelin gigaspora_denovo_assembly]$