[mira_talk] Re: MIRA warncode: READGROUP_UNEXPECTED_PAIRS

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Fri, 11 Jul 2014 21:16:39 +0200 (CEST)

> On July 10, 2014 at 2:26 PM "Offord, Victoria" <vofford@xxxxxxxxx> wrote:
> I have been rather impatient and when checking on the logs found this warning:
>
> MIRA warncode: READGROUP_UNEXPECTED_PAIRS
> Title: Unexpected pairs in readgroup
> [...]
> I am trying to create a merged assembly from our own Illumina HiSeq 100bp data
> with the 454 reads from the Schicht project (SRA reference: SRP018375).
> The annotation for this project made me think this wasn't a paired run.

*sigh* Looks like I'll have to react to the SRA naming scheme problem and put
some additional checks into MIRA.

Victoria, does the following help you out in the mean time?
  //www.freelists.org/post/mira_talk/Template-segment-not-recognized,1

B.

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