Dear all, I just released MIRA 4.0.1 at the usual place on SourceForge: http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/ This would be a simple maintenance release with a number of nifty improvements if it were not for an important bugfix to prevent mapping mode to sometimes edit away bases on the reference sequence. Upgrade to this version is therefore recommended for all users. Have fun with MIRA, Bastien 4.0.1 ----- - improvement: drastically improved mapping speed of reads belonging to strains which are far away from reference - improvement: RNA sequences (having U instead of T) can now be read natively. U bases are automatically converted to T. - improvement: mirabait can now work with multiple input files - improvement: functionality to change prefix of reads on the fly while loading data. Keyword: 'rename_prefix' in the manifest file - improvement: build on OSX now does not delete OSXstatlibs directory - bugfix: in mapping assemblies, bases of the reference could be edited away on very rare occasions. - bugfix: GFF3 files with phase information could result in wrong exon boundaries - bugfix: MIRA can now be installed in filesystem paths which contain a space - other small improvements and changes, mainly in error reporting and file conversion -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html