[mira_talk] Internal logic/programming/debugging error
- From: Jeremy Frank <jeremy.frank@xxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Fri, 12 Sep 2014 13:21:39 +0000
Good afternoon,
I’ve been trying to use MIRA to do a hybrid assembly of Illlumina HiSeq data
along with PacBio data for metagenomic sequences. The input consists of around
80 million HiSeq paired-end reads with around 200 thousand, 1-3 kb PacBio ccs
reads. I received the following error:
Internal logic/programming/debugging error (sigh this should not have
happened)
________________________________
* More than 2^31 skim hits would be taken ... this was not foreseen yet. *
* Please contact the author. *
________________________________
->Thrown: void Assembly::reduceSkimHits4(int32 version, const string prefix,
const string postfix, const string logname)
->Caught: main
Aborting process, probably due to an internal error.
If you want to report the error, please do so on
http://sourceforge.net/p/mira-assembler/tickets/<http://sourceforge.net/p/mira-assembler/tickets>
and also give a short notice on the mira talk mailing list.
If reporting, please do not delete the log and checkpoint directories, there may
be files in them which could be needed to find the problem.
Subscribing / unsubscribing to mira talk, see:
//www.freelists.org/list/mira_talk
CWD: /mnt/users/jeremya
Thank you for noticing that this is NOT a crash, but a
controlled program stop.
Failure, wrapped MIRA process aborted.
Has anyone else seen something like this? Is there a way to get around this?
Thanks,
Jeremy
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