[mira_talk] Re: How to generate SNP list?
- From: Arun Rawat <rawat_arun@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 25 Apr 2011 15:38:24 -0700 (PDT)
I have around 130 contigs (>500 and depth >24) for bacterial genome after
assembling with MIRA for SOLEXA and 454 datasets. I want to create a reference
genome out of these contigs. Any ideas how can I go for scaffolding. I tried to
use SSPACE but it still leaves me with around 80 contigs. Anyone used software
like Projector/Genomap to close gaps?
Arhn
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