[mira_talk] Re: Hash frequency specification (precomputation)

  • From: Robert Bruccoleri <bruc@xxxxxxxxxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Sun, 23 Oct 2011 18:56:12 -0400

Dear Bastien,
   I understand -- thanks anyway.

   Does the hash data get written to the log directory?

   Cheers,
   Bob

Bastien Chevreux wrote:
On Oct 23, 2011, at 22:44 , Robert Bruccoleri wrote:
Is this clear?

Crystal.

The answer is still no, sorry. While in theory one could think of a mechanism 
to let MIRA use - under some circumstances - substitute files for the hash 
statistics (which you would need to generate as well, and it's not only k-mer 
frequencies in there but also positioning and a couple of other things), I fear 
that the changes to the code are non trivial to implement / integrate. And at 
the moment I have so many other burning areas that I won't have any time to 
spend on this kind of problem, sorry again.

B.

begin:vcard
fn:Robert Bruccoleri
n:Bruccoleri;Robert
org:Audacious Energy, LLC and Congenomics, LLC
adr:;;;;;;USA
email;internet:bruc@xxxxxxx
title:President
version:2.1
end:vcard

Other related posts: