[mira_talk] Re: Fwd: ace file output from MIRA

On Mittwoch 13 Mai 2009 Lionel Guy wrote:
> On 13 May 2009, at 23:01 , Bastien Chevreux wrote:
> > Do you mean that tags for reads (RT) must be at the end of each contig
> > together with contig tags (CT)? What happens for ace files with
> > multiple
> > contigs?
>
> Nope, worse (in my opinion). All tags (CT and RT) for all contigs and
> reads must be at the very end of the file, after the last read of the
> last contig. I'm away from my files now and couldn't test it
> completely, but I just copied a bunch a CT tags from the first contig
> to the end of the file, and they magically appeared when I fired
> consed...

Hi Lionel,

I'm a little bit puzzled. From what I could find in available consed 
documentation on the ACE format, everything should be right and I can't find a 
viable reason why consed can't load the tags.

Could you please contact the consed developer and see what they have to say on 
that topic?

Regards,
  Bastien


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