I'm a new user of mira so please bear with me. I have 2 sets of Illumina paired 76 reads that are from a bacterial strain. I want to find variations(snp, structural the works) between them. They are pretty close to a sequenced strain found in refseq at NCBI. So, following the nice examples in the documentation, I downloaded the genbank file and tried to align to it. mira want's nothing to do with the file. I get a lot of: "Fishy tag (to is greater than sequence length of 0):" And in the end it stops with: Internal logic/programming/debugging error (*sigh* this should not have happened). Please file a bug report on http://sourceforge.net/apps/trac/mira-assembler/ "NC_007793: tag to (0) >= len of sequence (0)?" ->Thrown: void Read::addTag(tag_t & tag) ->Caught: void setTags(const vector<tag_t> & tags) Aborting process, probably due to an internal error. I can use the fasta file, but I would have like to use mira's bells and whistles when using it with genbank files. Before submitting a bug, I just wanted to see if others could enlighten me. Thanks Louis -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html