[mira_talk] Convert_project problem

Hi

I'm trying to use convert_project to convert a caf file into a clipped
fasta file.  I use the following command:

convert_project -f caf -t clippedfasta project.caf
project.caf.clipped.fasta

I get the following error:

-t clippedfastais not a valid type!

The documentation lists "clippedfasta" as a valid "totype".  What am I
doing wrong?

Also, what is the nature of the fasta files produced by default by mira
in the "<project>_d_results" directory?  How are they different from
what is supposed to be produced using the "clippedfasta" and
"maskedfasta" when using convert_project to convert the output caf file?

Lastly, is it wrong to think of the sequence in the
<project>_out.unpadded.fasta file as mira's best approximation of the
actual sequence?  If not, what is recommended to achieve a simple,
working sequence dataset short of extensive, manual editing of the
assembly?

Thank you for your help

Mark 
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