[mira_talk] Re: Compiling MIRA -> error

  • From: "Martin A. Hansen" <mail@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 13 Aug 2009 18:23:56 +0200

On the server, another type of flex related err:

:o(


Martin

Making install in io
make[2]: Entering directory
`/home/maasha/maasha_install/tmp/mira-3rc2/src/io'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\"
-DPACKAGE_VERSION=\"3rc2\" -DPACKAGE_STRING=\"mira\ 3rc2\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"mira\" -DVERSION=\"3rc2\"
-DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\"
-DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict
-DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1
-DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1
-DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/
-DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/
-DDEVELOPMENTVERSION=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -DENABLE64=1 -I.
-I../    -DPUBLICQUIET -DAJ_Linux64   -O3 -funroll-loops -pthread
-I/home/maasha/maasha_install/include/boost-1_39 -MT gbf.o -MD -MP -MF
.deps/gbf.Tpo -c -o gbf.o gbf.C
In file included from ../io/gbf.H:38,
                 from gbf.C:28:
../io/exp.H:49:23: error: FlexLexer.h: No such file or directory
../io/exp.H:163: error: ‘FlexLexer’ has not been declared
../io/exp.H:164: error: ‘FlexLexer’ has not been declared
make[2]: *** [gbf.o] Error 1
make[2]: Leaving directory
`/home/maasha/maasha_install/tmp/mira-3rc2/src/io'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/maasha/maasha_install/tmp/mira-3rc2/src'
make: *** [install-recursive] Error 1


On Thu, Aug 13, 2009 at 12:04 PM, Martin A. Hansen <mail@xxxxxxxxx> wrote:

> Nay, still problems :o(
>
> Anyway, I was just playing around trying to install MIRA on my Mac, but now
> I am going to try the Linux server.
>
>
> Martin
>
>
> maasha@cletus:/tmp/mira-3rc2$ make
> Making all in src
> Making all in lec
> make[2]: Nothing to be done for `all'.
> Making all in io
> make[2]: Nothing to be done for `all'.
> Making all in stdinc
> make[2]: Nothing to be done for `all'.
> Making all in errorhandling
> make[2]: Nothing to be done for `all'.
> Making all in util
> make[2]: Nothing to be done for `all'.
> Making all in mira
> make[2]: Nothing to be done for `all'.
> Making all in EdIt
> make[2]: Nothing to be done for `all'.
> Making all in caf
> make[2]: Nothing to be done for `all'.
> Making all in examine
> make[2]: Nothing to be done for `all'.
> Making all in knn_abi373
> make[2]: Nothing to be done for `all'.
> Making all in knn_alf
> make[2]: Nothing to be done for `all'.
> Making all in examples_programming
> /bin/sh ../../libtool --tag=CXX   --mode=link g++ -pthread
> -I/tmp/fisk//include/boost-1_39 -DPUBLICQUIET   -O2 -pthread
> -I/tmp/fisk//include/boost-1_39 -L../io/ -L../util/ -L../errorhandling/
> -L../mira -L../examine/ -L../EdIt/ -L../caf/ -L../knn_abi373 -L../knn_alf
> -L/tmp/fisk//lib -L/tmp/fisk//lib -lboost_thread-xgcc40-mt-1_39 -o mira_101
> mira_101.o -lmira  -lEdIt -lExamine -lmsupport -lestass -lerrorhandling
> -lutil -ldptools -lfio -lcaf -lKNN_abi373 -lm -lexpat -lz
> -lboost_thread-xgcc40-mt-1_39
> libtool: link: g++ -pthread -I/tmp/fisk//include/boost-1_39 -DPUBLICQUIET
> -O2 -pthread -I/tmp/fisk//include/boost-1_39 -o mira_101 mira_101.o
> -Wl,-bind_at_load  -L/tmp/mira-3rc2/src/io -L/tmp/mira-3rc2/src/util
> -L/tmp/mira-3rc2/src/errorhandling -L/tmp/mira-3rc2/src/mira
> -L/tmp/mira-3rc2/src/examine -L/tmp/mira-3rc2/src/EdIt
> -L/tmp/mira-3rc2/src/caf -L/tmp/mira-3rc2/src/knn_abi373
> -L/tmp/mira-3rc2/src/knn_alf -L/tmp/fisk//lib -lmira -lEdIt -lExamine
> -lmsupport -lestass -lerrorhandling -lutil -ldptools -lfio -lcaf
> -lKNN_abi373 -lm /usr/lib/libexpat.dylib -lz -lboost_thread-xgcc40-mt-1_39
> -pthread
> Undefined symbols:
>   "byteToHumanReadableSize(double, std::basic_ostream<char,
> std::char_traits<char> >&)", referenced from:
>       Assembly::dmi_dumpALine(std::basic_ostream<char,
> std::char_traits<char> >&, char const*, unsigned long, unsigned long,
> unsigned long, unsigned long)in libmira.a(assembly.o)
>       Assembly::dmi_dumpALine(std::basic_ostream<char,
> std::char_traits<char> >&, char const*, unsigned long, unsigned long,
> unsigned long, unsigned long)in libmira.a(assembly.o)
>       Assembly::dmi_dumpALine(std::basic_ostream<char,
> std::char_traits<char> >&, char const*, unsigned long, unsigned long,
> unsigned long, unsigned long)in libmira.a(assembly.o)
>       Assembly::dumpMemInfo()      in libmira.a(assembly.o)
>       Assembly::dumpMemInfo()      in libmira.a(assembly.o)
>       Assembly::loadAlignmentsFromFile(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>   "dateStamp(std::basic_ostream<char, std::char_traits<char> >&)",
> referenced from:
>       Assembly::loadExternalSCFQualities()      in libmira.a(assembly_io.o)
>       Assembly::loadSequenceData()      in libmira.a(assembly_io.o)
>       Assembly::loadSequenceData()      in libmira.a(assembly_io.o)
>       Assembly::loadSequenceData()      in libmira.a(assembly_io.o)
>       Assembly::loadSequenceData()      in libmira.a(assembly_io.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::saveResults()      in libmira.a(assembly.o)
>       Assembly::huntPossibleContigJoinGrinches(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::huntPossibleContigJoinGrinches(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::loadAlignmentsFromFile(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::loadAlignmentsFromFile(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::loadAlignmentsFromFile(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::loadAlignmentsFromFile(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::reduceSkimHits2(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::findPossibleOverlaps(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in libmira.a(assembly.o)
>       Assembly::makeAlignments(bool (*)(Assembly&, int, int), bool, bool,
> int, std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >)in
> libmira.a(assembly.o)
>       Assembly::makeAlignments(bool (*)(Assembly&, int, int), bool, bool,
> int, std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >)in
> libmira.a(assembly.o)
>       Assembly::makeAlignments(bool (*)(Assembly&, int, int), bool, bool,
> int, std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >)in
> libmira.a(assembly.o)
>       Assembly::calcPossibleSeqVectorClipoffs(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in
> libmira.a(dataprocessing.o)
>       Assembly::correctContigs()      in libmira.a(dataprocessing.o)
>       Assembly::extendADS(int, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >)in
> libmira.a(dataprocessing.o)
>       Assembly::performNewProposedCutbackClips(std::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >
> const&)in libmira.a(dataprocessing.o)
>       assout::saveAssemblyInfo(AssemblyInfo&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&, bool)in
> libmsupport.a(assembly_output.o)
>       ReadPool::makeTemplateIDs()      in libmsupport.a(readpool.o)
>       ReadPool::makeStrainIDs()      in libmsupport.a(readpool.o)
>       Skim::skimGo(ReadPool&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&,
> std::vector<std::set<unsigned int, std::less<unsigned int>,
> std::allocator<unsigned int> >, std::allocator<std::set<unsigned int,
> std::less<unsigned int>, std::allocator<unsigned int> > > >&,
> std::vector<unsigned int, std::allocator<unsigned int> >&,
> std::vector<unsigned int, std::allocator<unsigned int> >&, std::vector<int,
> std::allocator<int> >&, std::vector<int, std::allocator<int> >&, unsigned
> int, unsigned int, bool, unsigned char, unsigned char, std::vector<int,
> std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&,
> unsigned int)in libmira.a(skim.o)
>       Skim::skimGo(ReadPool&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&,
> std::vector<std::set<unsigned int, std::less<unsigned int>,
> std::allocator<unsigned int> >, std::allocator<std::set<unsigned int,
> std::less<unsigned int>, std::allocator<unsigned int> > > >&,
> std::vector<unsigned int, std::allocator<unsigned int> >&,
> std::vector<unsigned int, std::allocator<unsigned int> >&, std::vector<int,
> std::allocator<int> >&, std::vector<int, std::allocator<int> >&, unsigned
> int, unsigned int, bool, unsigned char, unsigned char, std::vector<int,
> std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&,
> unsigned int)in libmira.a(skim.o)
>       Skim::analyseHashes(ReadPool&, bool, unsigned char, unsigned char,
> unsigned int, std::basic_string<char, std::char_traits<char>,
> std::allocator<char> > const&)in libmira.a(skim.o)
>   "dumpFile(char const*, std::basic_ostream<char, std::char_traits<char>
> >&)", referenced from:
>       Assembly::dumpMemInfo()      in libmira.a(assembly.o)
>       Assembly::dumpMemInfo()      in libmira.a(assembly.o)
>   "splitFullPathAndFileName(std::basic_string<char, std::char_traits<char>,
> std::allocator<char> > const&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&, std::basic_string<char,
> std::char_traits<char>, std::allocator<char> >&)", referenced from:
>       ReadPool::mergeXMLTraceInfo(std::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&)in
> libmsupport.a(readpool.o)
>   "editContigBack(Contig&, EDITParameters&)", referenced from:
>       Assembly::buildFirstContigs(int, EDITParameters const&, bool)in
> libmira.a(assembly.o)
>       Assembly::correctContigs()      in libmira.a(dataprocessing.o)
>   "EDITParameters::EDITParameters()", referenced from:
>       Assembly::assemble()     in libmira.a(assembly.o)
>       Assembly::correctContigs()      in libmira.a(dataprocessing.o)
>   "EDITParameters::~EDITParameters()", referenced from:
>       Assembly::assemble()     in libmira.a(assembly.o)
>       Assembly::assemble()     in libmira.a(assembly.o)
>       Assembly::assemble()     in libmira.a(assembly.o)
>       Assembly::correctContigs()      in libmira.a(dataprocessing.o)
>       Assembly::correctContigs()      in libmira.a(dataprocessing.o)
>   "diffsuseconds(timeval&)", referenced from:
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
>   "conditionalStrCpy(char const*)", referenced from:
>       Notify::Notify(unsigned char, char const*)in
> liberrorhandling.a(errorhandling.o)
>       Notify::Notify(unsigned char, char const*, char const*)in
> liberrorhandling.a(errorhandling.o)
>       Notify::Notify(unsigned char, char const*, char const*)in
> liberrorhandling.a(errorhandling.o)
>       Notify::Notify(unsigned char, char const*, char const*, char
> const*)in liberrorhandling.a(errorhandling.o)
>       Notify::Notify(unsigned char, char const*, char const*, char
> const*)in liberrorhandling.a(errorhandling.o)
>       Notify::Notify(unsigned char, char const*, char const*, char
> const*)in liberrorhandling.a(errorhandling.o)
>       Notify::operator=(Notify const&)in
> liberrorhandling.a(errorhandling.o)
>       Notify::operator=(Notify const&)in
> liberrorhandling.a(errorhandling.o)
>       Notify::operator=(Notify const&)in
> liberrorhandling.a(errorhandling.o)
>       ReadPool::makeTemplateIDs()      in libmsupport.a(readpool.o)
>       Contig::operator=(Contig const&)in libmsupport.a(contig.o)
>   "avg_suseconds(std::vector<int, std::allocator<int> >&)", referenced
> from:
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::n4_buildContigStartWithStrongGood(std::vector<Align,
> std::allocator<Align> >&, int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
>       Pathfinder::buildContig(std::vector<Align, std::allocator<Align> >&,
> int, Contig&)in libmira.a(newpathfinder.o)
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> make[2]: *** [mira_101] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all-recursive] Error 1
>
> On Thu, Aug 13, 2009 at 11:29 AM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
>
>> > From: Martin A. Hansen
>> > I am battling to compile MIRA against a locally compiled version of
>> libboost.
>> > [...]
>> > exp_flexer.flex.C
>> > exp_flexer.flex.C:324: error: no 'int EXPFlexLexer::yywrap()' member
>> function declared in class 'EXPFlexLexer'
>> > make[2]: *** [exp_flexer.flex.o] Error 1
>> > make[1]: *** [all-recursive] Error 1
>> > make: *** [all-recursive] Error 1
>> > This is a Mac Intel running OSX 10.5.7
>>
>> Hello Martin,
>>
>> that's fortunately not a problem with boost, but something I discovered
>> myself only beginning of this week: the mira source package is distributed
>> with pre-flexed source files ... which should not happen. I've corrected
>> that in the current development tree and this will ship in the next release.
>>
>> In the mean time, the solution for you is fortunately pretty simple: in
>> the top directory of mira, do the following
>>
>>  find . -name "*.flex.C" -exec rm -f {} \;
>>
>> This particular problem should then be solved and you can run make. I'll
>> cross fingers for it to link, this has been pretty difficult in the past on
>> OSX.
>>
>> Regards,
>>  Bastien
>>
>>
>> --
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