[mira_talk] Re: Chimera clipping

  • From: Philipp Brand <Philipp.Brand@xxxxxxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 13 Oct 2011 22:03:42 +0200

Thanks for the fast answer
Am 13.10.2011 um 21:57 schrieb Bastien Chevreux:

> On Oct 13, 2011, at 21:27 , Philipp Brand wrote:
>> I am new in the MIRA community and I am very interested in the ability of 
>> MIRA to detect and clip chimeras.
>> Is there a file with contains information about the chimeric sequences 
>> detected in the assembly? I tried to find that but still remain 
>> unsuccessful. 
> 
> All clips are recorder in a file called *_int_clippings.txt (or similar) 
> which is located in the *_d_tmp directory. A couple of grep / grep -v should 
> give the reads you search for (sorry no example, I have none atm).
> 
> B.
> 
> 
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