On Oct 13, 2011, at 21:27 , Philipp Brand wrote: > I am new in the MIRA community and I am very interested in the ability of > MIRA to detect and clip chimeras. > Is there a file with contains information about the chimeric sequences > detected in the assembly? I tried to find that but still remain unsuccessful. All clips are recorder in a file called *_int_clippings.txt (or similar) which is located in the *_d_tmp directory. A couple of grep / grep -v should give the reads you search for (sorry no example, I have none atm). B. -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html