[mira_talk] Re: Chimera clipping

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 13 Oct 2011 21:57:55 +0200

On Oct 13, 2011, at 21:27 , Philipp Brand wrote:
> I am new in the MIRA community and I am very interested in the ability of 
> MIRA to detect and clip chimeras.
> Is there a file with contains information about the chimeric sequences 
> detected in the assembly? I tried to find that but still remain unsuccessful. 

All clips are recorder in a file called *_int_clippings.txt (or similar) which 
is located in the *_d_tmp directory. A couple of grep / grep -v should give the 
reads you search for (sorry no example, I have none atm).

B.


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