[mira_talk] Re: Assembly

  • From: Lionel Guy <guy.lionel@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Fri, 2 Oct 2009 15:31:52 +0200

http://www.bioperl.org/wiki/Qual_sequence_format

On 2 Oct 2009, at 15:27 , Sharmista Saha wrote:

Okays.

Now I am following Lionel only.

One quick simple doubt I know, fasta and fastq file, but what is this fasta qual? I did not get that? if you can let me know, it will be good.


Thanks and regards,
Sharmistha



On Fri, Oct 2, 2009 at 6:30 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:

You are confusing the formats:

FASTA + FASTA quality   (http://en.wikipedia.org/wiki/FASTA_format)

 versus

FASTQ   (http://en.wikipedia.org/wiki/FASTQ_format )

As the story unravels and the puzzle comes together from the bits and pieces of your mails, it seems that you tried all the time to load a FASTQ file as FASTA quality file. This obviously cannot work.

Now, please follow step by step the advice Lionel just gave you in his last mail and things should be running smoothly.

Regards,
 Bastien


--
You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html


============================================
Lionel Guy
Thunmansgatan 25, SE-75421 Uppsala

phone: +46 (0)18 245596
mobile: +46 (0)73 9760618
email: guy.lionel@xxxxxxxxx
============================================


--
You have received this mail because you are subscribed to the mira_talk mailing 
list. For information on how to subscribe or unsubscribe, please visit 
http://www.chevreux.org/mira_mailinglists.html

Other related posts: