[mira_talk] Re: Assembling 454 and Solexa mate-pair data - rethinking ...
- From: Sven Klages <sir.svencelot@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 9 Sep 2009 15:10:37 +0200
Hi Martin,
2009/9/9 Martin A. Hansen <mail@xxxxxxxxx>
> I ran all the 454 reads (n=478840, ~270bp) and Solexa reads (n=3308974,
> 35bp and 44bp pairs) along with the quality scores:
>
> M1_in.454.fasta
> M1_in.454.qual
> M1_in.solexa.fasta
> M1_in.solexa.qual
> M1_traceinfo_in.454.xml
>
> [...]
No idea if this is relevant, but MIRA docs say default file naming should be
something like
M1_in.454.fasta
M1_in.454.fasta.qual
M1_in.solexa.fasta
M1_in.solexa.fasta.qual
Maybe your quals have not been read?
cheers,
Sven
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