[mira_talk] Re: Assembling 454 and Solexa mate-pair data - rethinking ...
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 4 Sep 2009 21:15:52 +0200
On Freitag 04 September 2009 Martin A. Hansen wrote:
> Btw, I have a feeling that the preparation of the mate-pair library was
> somehow was faulty so that there are no mate-pair reads - only single
> reads. Would that effect run-time of MIRA?
Using templates has some impact of O(nlog(n)) with n being number of paired-
end reads in contig during contig assembly. Should not be too noticable unless
one has contigs with a million reads or more.
Hmmm ... which may be the case for hybrid assemblies. I'll have to rethink
whether trading space for time is needed.
Regards,
Bastien
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
