[mira_talk] Re: Ace2stats tool
- From: Laurent MANCHON <lmanchon@xxxxxxxxxxxxxx>
- To: Evan Hart <ehart@xxxxxxxxxxx>, mira_talk@xxxxxxxxxxxxx
- Date: Tue, 31 Jan 2012 09:57:20 +0100
Le 30/01/2012 23:54, Evan Hart a écrit :
Can you provide an example output of what kind of details this program
provides?
the same output provided by Mira into contigstats file:
# name length av.qual #-reads mx.cov. av.cov
GC% CnIUPAC CnFunny CnN CnX CnGap CnNoCov
Contig_name_90_1 1246 81 2752 1254 610.57 48.48
0 0 0 0 86 0
Contig_name_90_2 1794 84 3136 756 431.78 37.35
0 0 0 0 93 0
Contig_name_90_3 1554 83 7886 1741 639.38 35.07
0 0 0 0 149 0
Contig_name_90_4 666 80 2784 2253 878.06 34.68
0 0 0 0 69 0
.../...
Laurent --
Thanks,
Evan
On Thu, Jan 26, 2012 at 5:15 AM, Laurent MANCHON
<lmanchon@xxxxxxxxxxxxxx <mailto:lmanchon@xxxxxxxxxxxxxx>> wrote:
--hello,
I don't know if this could be useful, but I just finished
a program that generates statistics directly from ACE files.
It is faster or slower depending on the number of sequences per
contig encountered.
It works well as is but I think it can be optimized, it will
depend on feedback and demand.
It is to be tested on differents platforms.
For now I have compiled a 64bit version available
here:http://www.vital-it.ch/prd/lmanchon/ace2stats.bin
There are small differences in results with those generated by
mira, but it is insignificant (i think).
thank you,
Laurent --
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