[mira_talk] Re: About ends clipping

Hi Bastien,

I'm very glad to hear that, Thank you so much.

Does the "-CL:pecbph" in new version 2.9.45?


                                          Yi


> On Dienstag 28 April 2009 Yi Zheng wrote:
>> Hope you can add this function to mira and thank you so much.
>
> Well ... I needed it myself yesterday (but in another context) so I added
> it:
> "-CL:pecbph"
>
> The downside is that some statistics calculations need to be done twice.
> But
> as these take just a couple of minutes even in Solexa projects with 7
> million
> reads, I thought it's an acceptable price to pay.
>
> Note that values below 10 don't make much sense, valuse below 12 would
> still
> lead to high number of false negatives for Solexa data (less for 454 and
> not
> too much for Sanger).
>
> Regards,
>   Bastien
>
>
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