[mira_talk] Re: 454 walkthrough no quality data?
- From: Jordi Durban <jordi.durban@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 12 Dec 2011 20:55:49 +0100
Hi!
I think there will be plenty of answers to this question.. just have a look
to -LR and -AS on the MIRA manual.
Perhaps something like -AS:epoq=no or -LR:mxti=no could be useful... but
actually I don't remember the manual, it's just what I did.
2011/12/12 Charles Determan Jr <deter088@xxxxxxx>
> Greetings,
>
> I am new to MIRA and have been trying to work through the walkthrough for
> the 454 data. I am able to use sff_extract and rename everything according
> to the document (except changing fasta to fastq format). However, when I
> run the assembly with the command sudo /.../mira --project=bceti
> --job=denovo,genome,accurate,454 >&log_assembly, there are no results and
> the log file tells me there is no quality data. Any suggestions are
> thoughts for troubleshooting this would be truly appreciated. If you
> require further information or coding I have done, I can post that as well.
>
> Regards
>
--
Jordi
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